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Development and Evaluation of Research Methods, Instruments and Tools (1440) Natural Language Processing (1343) Innovations in Cancer Diagnostic and Decision Support (162) AI applications in genomics and pathology informatics, including generative AI (47) AI Language Models in Health Care (839)

Published on in Vol 10 (2026)

Preprints (earlier versions) of this paper are available at https://preprints.jmir.org/preprint/97117, first published .
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Large Language Model Framework for Structured Biomarker Extraction and Triple-Negative Breast Cancer Identification From Pathology Reports: Development and Evaluation Study

Large Language Model Framework for Structured Biomarker Extraction and Triple-Negative Breast Cancer Identification From Pathology Reports: Development and Evaluation Study

Authors of this article:

Nirmit Jain1 Author Orcid Image ;   Trisha Annambhotla1 Author Orcid Image ;   Akshara Siddharthan1 Author Orcid Image ;   Harshini Kanala1 Author Orcid Image ;   Armaan Budhiraja1 Author Orcid Image ;   Manglam Goutam Sinha1 Author Orcid Image ;   Devyani Charan2 Author Orcid Image ;   Muzaffar Ahmad Dar3 Author Orcid Image ;   Trupti Patel2 Author Orcid Image ;   Biji C L1 Author Orcid Image
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Nirmit Jain   1 ;   Trisha Annambhotla   1 ;   Akshara Siddharthan   1 ;   Harshini Kanala   1 ;   Armaan Budhiraja   1 ;   Manglam Goutam Sinha   1 , BTech ;   Devyani Charan   2 , Msc ;   Muzaffar Ahmad Dar   3 , PhD ;   Trupti Patel   2 , PhD ;   Biji C L   1 , PhD

1 School of Computer Science and Engineering, Vellore Institute of Technology, Vellore, Tamil Nadu, India

2 School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India

3 School of Advanced Sciences, Vellore Institute of Technology, Vellore, Tamil Nadu, India

Corresponding Author:

  • Biji C L, PhD
  • School of Computer Science and Engineering
  • Vellore Institute of Technology
  • Vellore Campus, Tiruvalam Road, Katpadi
  • Vellore, Tamil Nadu 632014
  • India
  • Phone: 91 9446171877
  • Email: biji.cl@vit.ac.in