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Provenance Information for Biomedical Data and Workflows: Scoping Review

Provenance Information for Biomedical Data and Workflows: Scoping Review

Provenance concerns the information about the genesis of a given object. Provenance properties cover specific requirements tied to the term provenance; they also describe selected characteristics in this context. Objective includes the purposes or intention of provenance capture. The comprehensive search strategy is recorded in the study protocol [17], and search strings combined with Boolean operators are attached (Multimedia Appendix 1).

Kerstin Gierend, Frank Krüger, Sascha Genehr, Francisca Hartmann, Fabian Siegel, Dagmar Waltemath, Thomas Ganslandt, Atinkut Alamirrew Zeleke

J Med Internet Res 2024;26:e51297

Traceable Research Data Sharing in a German Medical Data Integration Center With FAIR (Findability, Accessibility, Interoperability, and Reusability)-Geared Provenance Implementation: Proof-of-Concept Study

Traceable Research Data Sharing in a German Medical Data Integration Center With FAIR (Findability, Accessibility, Interoperability, and Reusability)-Geared Provenance Implementation: Proof-of-Concept Study

In this vein, the FHIR resource “provenance” records entities and processes involved in creating a specific resource. From a technical point of view, the FHIR Provenance resource is founded on the framework of the open W3 C standard PROV-Data Model definition and ontology [20], the successor to the Open Provenance Model [21]. Here, the concepts of linked entities, activities, and agent resources enable the establishment of a provenance model.

Kerstin Gierend, Dagmar Waltemath, Thomas Ganslandt, Fabian Siegel

JMIR Form Res 2023;7:e50027

The Status of Data Management Practices Across German Medical Data Integration Centers: Mixed Methods Study

The Status of Data Management Practices Across German Medical Data Integration Centers: Mixed Methods Study

Provenance assertions are a form of contextual metadata and can themselves become important records with their own provenance” [13]. W3 C provenance: is a family of specifications for provenance with a generic concept to express specific meta-information (or metadata) about data and its related artifacts.

Kerstin Gierend, Sherry Freiesleben, Dennis Kadioglu, Fabian Siegel, Thomas Ganslandt, Dagmar Waltemath

J Med Internet Res 2023;25:e48809

Approaches and Criteria for Provenance in Biomedical Data Sets and Workflows: Protocol for a Scoping Review

Approaches and Criteria for Provenance in Biomedical Data Sets and Workflows: Protocol for a Scoping Review

Consequently, a systematic knowledge compilation regarding provenance and potential gaps is needed. Provenance describes the origin of data. A basic understanding of the term “provenance” is given with the description “what happened” to the data [4]. Several different models exist to formally express provenance information, for instance, the World Wide Web Consortium PROV standard or CWLProv [5,6].

Kerstin Gierend, Frank Krüger, Dagmar Waltemath, Maximilian Fünfgeld, Thomas Ganslandt, Atinkut Alamirrew Zeleke

JMIR Res Protoc 2021;10(11):e31750